SORTEE Outputs

SORTEE Outputs

Journal and Preprint publications 

Manuscripts related to past or current SORTEE hackathons or projects [Please add if you know any! Ideally, with some links]:

  • Braga, P. H. P., Hébert, K., Hudgins, E. J., Scott, E. R., Edwards, B. P. M., Sánchez Reyes, L. L., Grainger, M. J., Foroughirad, V., Hillemann, F., Binley, A. D., Brookson, C. B., Gaynor, K. M., Shafiei Sabet, S., Güncan, A., Weierbach, H., Gomes, D. G. E., & Crystal-Ornelas, R. (2023). Not just for programmers: How GitHub can accelerate collaborative and reproducible research in ecology and evolution. Methods in Ecology and Evolution, 14, 1364–1380. https://doi.org/10.1111/2041-210X.14108    -    [from SORTEE2021 Hackathon]

  • Hiltemann, S., Rasche, H., Gladman, S., Hotz, H., Larivière, D., Blankenberg, D., Jagtap, P. D., Wollmann, T., Bretaudeau, A., Goué, N., Griffin, T. J., Royaux, C., Bras, Y. L., Mehta, S., Syme, A., Coppens, F., Droesbeke, B., Soranzo, N., Bacon, W., Psomopoulos, F., Gallardo-Alba, C., Davis, J., Föll, M. C., Fahrner, M., Doyle, M. A., Serrano-Solano, B., Fouilloux, A. C., Heusden, P. V., Maier, W., Clements, D., Heyl, F., Grüning, B., & Batut, B. (2023). Galaxy Training: A powerful framework for teaching!. PLoS Computational Biology 19(1): e1010752. https://doi.org/10.1371/journal.pcbi.1010752   -    [from SORTEE2021, SORTEE2022 Hackathons and other events outside SORTEE]

  • Ivimey-Cook ER, Pick JL, Bairos-Novak KR, Culina A, Gould E, Grainger M, Marshall BM, Moreau D, Paquet M, Royauté R, Sánchez-Tójar A, Silva I, Windecker SM. Implementing code review in the scientific workflow: Insights from ecology and evolutionary biology. Journal of Evolutionary Biology. 2023 Oct;36(10):1347-1356. doi: 10.1111/jeb.14230   -     [from SORTEE2022 Hackathon]

  • Noble DWA, Xirocostas ZA, Wu NC, Martinig AR, Almeida RA, Bairos-Novak KR, Balti H, Bertram MG, Bliard L, Brand JA, Byrne I, Chan YC, Clink DJ, Corbel Q, Correia RA, Crawford-Ash J, Culina A, D’Bastiani E, Deme GG, de Souza Leite M, Dhellemmes F, Dimri S, Drobniak SM, Elsy AD, Everingham SE, Gascoigne SJL, Grainger MJ, Hossack GC, Hovstad KA, Ivimey-Cook ER, Jones ML, Kačergytė I, Küstner G, Leibold DC, Mair MM, Martin J, Mizuno A, Moodie IR, Moreau D, O’Dea RE, Orr JA, Paquet M, Parajuli R, Pick JL, Pottier P, Purgar M, Recio P, Roche DG, Royauté R, Shafiei Sabet S, Segovia JMG, Silva I, Sánchez-Tójar A, Soares BE, Szabo B, Takola E, Thoré ESJ, Timilsina B, van Dis NE, Verberk WCEP, Vriend SJG, Wild KH, Williams C, Yang Y, Nakagawa S, Lagisz M. The promise of community-driven preprints in ecology and evolution. Proceedings of the Royal Society B: Biological Sciences. 2025 Jan;292(2039):20241487. doi: 10.1098/rspb.2024.1487    -     [from SORTEE2023 Hackathon]

  • Lagisz M, Bairos-Novak KR, Martinig AR, Bertram MG, Mizuno A, Shafiei Sabet S, Paquet M, Santana MS, Thoré ESJ, Trubanová N, Rutkowska J, Orr JA, Takola E, Yang Y, Pottier P, Gomes DGE, Chan YC, Xian Z, Akogwu CO, Drobniak SM, Nakagawa S. Priced out of belonging? Insufficient concessions on membership fees across international societies in ecology and evolution. Proceedings of the Royal Society B: Biological Sciences. 2025 Feb;292(2040):20241430. doi: 10.1098/rspb.2024.1430    -     [from SORTEE2023 Hackathon]

  • Ivimey-Cook, E., Sánchez-Tójar, A., Berberi, I., Culina, A., Roche, D., Almeida, R., Amin, B., Bairos-Novak, K., Balti, H., Bertram, M., Bliard, L., Byrne, I., Chan, Y.-C., Cioffi, W., Corbel, Q., Elsy, A., Florko, K., Gould, E., Grainger, M., ... Moran, N. (2025). From Policy to Practice: Progress towards Data- and Code-Sharing in Ecology and Evolution. EcoEvoRxiv (preprint). https://doi.org/10.32942/X2492Q    -     [from SORTEE2023 Hackathon]